So the cam and crank timing belt sprockets are both for the same typ eof belt now and you're still having a problem?
Try disconnecting the battery for a minute to reset the computer, then start the car a few times idle and rev to cause the problem then check the ECU codes. To check the codes go to
http://www.allpar.com/fix/codes.html
Tell us the codes you get... it might be something to do with the IAC (idle air control), could need to be cleaned...